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Bioinformatics Engineer II
Ambry Genetics Corporation · Remote, United States
About The Role


 Essential Functions
- Drive technical solutions to problems, including end-to-end process flow from ideation to release, and estimating time and complexity
- Design and develop custom software according to ticket specifications
- Act as a role model for the team, settings standards for excellence and mentoring junior engineers
- Provide clear and consistent feedback on code reviews
- Meet with clients, partners, product owners, or other stakeholders to understand and clarify workflows and requirements
- Highlight blockers or issues arising during development to resolve in a timely manner
- Monitor process and log information, troubleshooting issues as needed
- Other duties as assigned.
Qualifications
- Bachelor's degree (+ at least 5 years work experience), Master’s degree (+ at least 2 years work experience), or PhD degree in Bioinformatics, Computer Science, or a related field
- Proficient in Python coding
- Intermediate-to-advanced experience working in Linux environments (e.g. compiling programs from source, performing text manipulations with pipes)
- Intermediate-to-advanced experience in relational databases (e.g., MySQL, PostgreSQL, Microsoft SQL Server)
- Proficiency with software engineering best practices, including git version control, unit testing, and documentation
- Knowledge of next-generation sequencing technologies and standard bioinformatics data formats (e.g., FASTQ, BAM, VCF, GTF)
- Excellent communication and interpersonal skills.
Preferred
- Experience with cloud computing environment (AWS, Azure, Google Cloud)
- Familiarity with Atlassian suite applications (Jira, Confluence, BitBucket)
- Knowledge of clinical genetics databases (e.g., Clinvar, HGMD) and HGVS sequence variant nomenclatures
- Prior experience in biology and/or an understanding of mutation analysis
- Creating and developing Docker containers
- Experience developing APIs
- Experience with CI/CD (e.g. Bamboo, Jenkins, AWS Code Pipeline)


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